Actinopyga flammea

goat
bioproject_species
Genome portal
Access to genome browser and other tools for the genome - Pending
Resampling required
Sample collected
Sample acquired
Data generation
In assembly
Submitted
Insdc open
  • Scientific name accepted: Actinopyga flammea
  • Authority: Cherbonnier, 1979
  • Phylum: Echinodermata
  • Genus: Actinopyga
  • Species: Actinopyga flammea
  • Ploidy: Unknown
  • Common name: No common name known
© By ATLASea photography team. License CC-BY-NC-SA-4.0
  • Collect event: MI-Kanameco
  • Coordinator(s): Sarah Samadi | Nicolas Puillandre
  • Operator(s): NOT_PROVIDED
  • Taxonomist(s): Stéphane Hourdez | Chantal Conand
  • Date: March 15, 2024
  • Site (sea): Pacific Ocean
  • Site (region): Reserve naturelle de l'ilot Amédée et du grand Récif Aboré
  • Latitude: -22.39268
  • Longitude: 166.28253

No occurrence data available from GBIF

  • ToLID prefix: ehActFlam
  • Actinopyga flammea archive: pending
  • Genome data portal (pending)
  • GoaT
  • WoRMS
  • NCBI
  • GBIF (pending)
  • OBIS
  • INPN (pending)
  • OpenObs (pending)
  • ENA BioProject of the sequencing raw data: PRJEB98895
  • ENA BioProject of the genome assembly: PRJEB98896
  • Assembly accession: GCA_978019465
  • EAR report with genome assembly metrics: PDF
  • Assembly ploidy: Not communicated
  • Sequencing: Not communicated
  • Size: 1.46 Gbp
  • GC content: 40.27%
  • Number of chromosomes: 24
  • Number of scaffolds: 516
  • N50 of scaffolds: 60.46 Mbp
  • L50 of scaffolds: 11
  • Number of contigs: 799
  • N50 of contigs: 12.95 Mbp
  • L50 of contigs: 33
  • Protein-coding genes: Undetermined
  • Gene length (average): Undetermined
  • Gene length (median): Undetermined
  • CDS length (average): Undetermined
  • CDS length (median): Undetermined
  • CDS proportion (genome): Undetermined
  • Genes without introns: Undetermined
  • Number of contigs with at least one gene (genome): Undetermined
  • Number of contigs with at least one gene (bases): Undetermined

BUSCO structural annotations completeness

BUSCO v6.0.0 (euk_genome_min, miniprot), lineage: eukaryota_odb12 (genomes: 456, BUSCOs: 129)v6.0.0 (euk_genome_min, miniprot), lineage: eukaryota_odb12 (genomes: 456, BUSCOs: 129)

Genome

  • Single-copy genes: Undetermined
  • Duplicated genes: Undetermined
  • Fragmented genes: Undetermined
  • Missing genes: Undetermined

Proteins

  • Single-copy genes: Undetermined
  • Duplicated genes: Undetermined
  • Fragmented genes: Undetermined
  • Missing genes: Undetermined