Harmothoe areolata
Access to genome browser and other tools for the genome
Resampling required
Sample collected
Sample acquired
Data generation
In assembly
Submitted
Insdc open
- Scientific name accepted: Harmothoe areolata
- Authority: (Grube, 1860)
- Phylum: Annelida
- Genus: Harmothoe
- Species: Harmothoe areolata
- Ploidy: Unknown
- Common name: No common name known
- Collect event: MI-GolfeDuLion
- Coordinator(s): Line Le Gall
- Operator(s): HOURDEZ Stéphane, VASSARD Emmanuel, UTGE José, LABRUNE Céline, LA RIVIERE Marie, MICHEZ Noëmie
- Taxonomist(s): Stéphane Hourdez
- Date: Oct. 3, 2023
- Site (sea): Mediterranean Sea
- Site (region): Sud Cap Béar
- Latitude: 42.513027
- Longitude: 3.134647
- ToLID prefix: wpHarAreo
- Harmothoe areolata archive: pending
- Genome data portal
- GoaT
- WoRMS
- NCBI
- GBIF (pending)
- OBIS
- INPN (pending)
- OpenObs (pending)
- ENA BioProject of the sequencing raw data: PRJEB86709
- ENA BioProject of the genome assembly: PRJEB86710
- Assembly accession: GCA_965276055
- EAR report with genome assembly metrics: PDF
- Assembly ploidy: Not communicated
- Sequencing: Not communicated
- Size: 1.66 Gbp
- GC content: 41.41%
- Number of chromosomes: 18
- Number of scaffolds: 279
- N50 of scaffolds: 88.73 Mbp
- L50 of scaffolds: 9
- Number of contigs: 516
- N50 of contigs: 20.71 Mbp
- L50 of contigs: 22
- Protein-coding genes: Undetermined
- Gene length (average): Undetermined
- Gene length (median): Undetermined
- CDS length (average): Undetermined
- CDS length (median): Undetermined
- CDS proportion (genome): Undetermined
- Genes without introns: Undetermined
- Number of contigs with at least one gene (genome): Undetermined
- Number of contigs with at least one gene (bases): Undetermined
BUSCO structural annotations completeness
BUSCO v6.0.0 (euk_genome_min, miniprot), lineage: eukaryota_odb12 (genomes: 456, BUSCOs: 129)v6.0.0 (euk_genome_min, miniprot), lineage: eukaryota_odb12 (genomes: 456, BUSCOs: 129)
Genome
- Single-copy genes: 96.9%
- Duplicated genes: 0.0%
- Fragmented genes: 0.8%
- Missing genes: 2.3%
Proteins
- Single-copy genes: Undetermined
- Duplicated genes: Undetermined
- Fragmented genes: Undetermined
- Missing genes: Undetermined