Thalassiosira sp. RCC11478
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Resampling required
Sample collected
Sample acquired
Data generation
In assembly
Submitted
Insdc open
- Scientific name accepted: Thalassiosira
- Authority: P.T. Cleve, 1873 emend. Hasle, 1973
- Phylum: Heterokontophyta
- Genus: Thalassiosira
- Ploidy: Unknown
- Common name: No common name known
PhyloPic color code:
Species match
Genus match
Family and above match
- Collect event: CC-Roscoff
- Coordinator(s): Katell Hervéou
- Operator(s): Charles Bachy|Michele Grego
- Taxonomist(s): Julie Joannic
- Date: April 30, 2024
- Site (sea): Atlantic Ocean
- Site (region): Roscoff Estacade
- Latitude: 48.73 / 48°43'48.0"N
- Longitude: 3.98 / 3°58'48.0"W
- ToLID prefix: uoThaSpeb
- Genome data portal
- GoaT
- WoRMS
- NCBI
- GBIF (pending)
- OBIS
- INPN (pending)
- OpenObs (pending)
- ENA BioProject of the sequencing raw data: PRJEB107826
- ENA BioProject of the genome assembly: PRJEB107827
- Assembly accession: GCA_986264995
- EAR report with genome assembly metrics: pending
- Size: 553.32 Mbp
- GC content: 43.5%
- Number of chromosomes: 21
- Number of scaffolds: 247
- N50 of scaffolds: 26.88 Mbp
- L50 of scaffolds: 9
- Number of contigs: 357
- N50 of contigs: 8.64 Mbp
- L50 of contigs: 22
- Protein-coding genes: Undetermined
- Gene length (average): Undetermined
- Gene length (median): Undetermined
- CDS length (average): Undetermined
- CDS length (median): Undetermined
- CDS proportion (genome): Undetermined
- Genes without introns: Undetermined
- Number of contigs with at least one gene (genome): Undetermined
- Number of contigs with at least one gene (bases): Undetermined
BUSCO structural annotations completeness
BUSCO v6.0.0 (euk_genome_min, miniprot), lineage: eukaryota_odb12 (genomes: 456, BUSCOs: 129)v6.0.0 (euk_genome_min, miniprot), lineage: eukaryota_odb12 (genomes: 456, BUSCOs: 129)
Genome
- Single-copy genes: Undetermined
- Duplicated genes: Undetermined
- Fragmented genes: Undetermined
- Missing genes: Undetermined
Proteins
- Single-copy genes: Undetermined
- Duplicated genes: Undetermined
- Fragmented genes: Undetermined
- Missing genes: Undetermined